Yikes @Crevanille, insanely long list. Wonder what was behind the half of them that got pulled.
From what I did see, shoutouts for Jackie Chan and Code Lyoko (and early Pokemon always wins by default, too). Me being an 80s kid, I watched my fair share of stuff. Seeing this conversation, though, made me realize that while I watched a fair share of cartoons, I'm not sure I really latched on to most of them once the theme music was over. My brother was the bigger fan of things and I just happened to be along for the ride.
I WILL, however, give my nod to these couple:
Q*bert, the signature show of Saturday Supercade
The original trio of the Disney Afternoon: The Adventures of the Gummi Bears, Ducktales & Rescue Rangers
And, the standard bearers of video game toons, The Super Mario Brothers Super Show (featuring The Legend of Zelda)